Index

A

addAssignmentRule() (simplesbml.SbmlModel method) addCompartment() (simplesbml.SbmlModel method) addEvent() (simplesbml.SbmlModel method) addInitialAssignment() (simplesbml.SbmlModel method)

addParameter() (simplesbml.SbmlModel method) addRateRule() (simplesbml.SbmlModel method) addReaction() (simplesbml.SbmlModel method) addSpecies() (simplesbml.SbmlModel method)

G

getCompartmentId() (simplesbml.SbmlModel method) getCompartmentIdSpeciesIsIn() (simplesbml.SbmlModel method) getCompartmentVolume() (simplesbml.SbmlModel method) getDocument() (simplesbml.SbmlModel method) getEventAssignment() (simplesbml.SbmlModel method) getEventId() (simplesbml.SbmlModel method) getEventString() (simplesbml.SbmlModel method) getEventTrigger() (simplesbml.SbmlModel method) getEventVariable() (simplesbml.SbmlModel method) getFunctionBody() (simplesbml.SbmlModel method) getFunctionId() (simplesbml.SbmlModel method) getListOfAllSpecies() (simplesbml.SbmlModel method) getListOfArgumentsInUserFunction() (simplesbml.SbmlModel method) getListOfBoundarySpecies() (simplesbml.SbmlModel method) getListOfCompartmentIds() (simplesbml.SbmlModel method) getListOfFloatingSpecies() (simplesbml.SbmlModel method) getListOfFunctionIds() (simplesbml.SbmlModel method) getListOfModifiers() (simplesbml.SbmlModel method) getListOfParameterIds() (simplesbml.SbmlModel method) getListOfReactionIds() (simplesbml.SbmlModel method) getListOfRuleIds() (simplesbml.SbmlModel method) getModel() (simplesbml.SbmlModel method) getModelId() (simplesbml.SbmlModel method) getNthBoundarySpeciesId() (simplesbml.SbmlModel method) getNthFloatingSpeciesId() (simplesbml.SbmlModel method) getNthReactionId() (simplesbml.SbmlModel method)

getNumArgumentsInUserFunction() (simplesbml.SbmlModel method) getNumBoundarySpecies() (simplesbml.SbmlModel method) getNumCompartments() (simplesbml.SbmlModel method) getNumEventAssignments() (simplesbml.SbmlModel method) getNumEvents() (simplesbml.SbmlModel method) getNumFloatingSpecies() (simplesbml.SbmlModel method) getNumFunctionDefinitions() (simplesbml.SbmlModel method) getNumInitialAssignments() (simplesbml.SbmlModel method) getNumModifiers() (simplesbml.SbmlModel method) getNumParameters() (simplesbml.SbmlModel method) getNumProducts() (simplesbml.SbmlModel method) getNumReactants() (simplesbml.SbmlModel method) getNumReactions() (simplesbml.SbmlModel method) getNumRules() (simplesbml.SbmlModel method) getNumSpecies() (simplesbml.SbmlModel method) getParameterId() (simplesbml.SbmlModel method) getParameterValue() (simplesbml.SbmlModel method) getProduct() (simplesbml.SbmlModel method) getProductStoichiometry() (simplesbml.SbmlModel method) getRateLaw() (simplesbml.SbmlModel method) getReactant() (simplesbml.SbmlModel method) getReactantStoichiometry() (simplesbml.SbmlModel method) getRuleId() (simplesbml.SbmlModel method) getRuleRightSide() (simplesbml.SbmlModel method) getRuleType() (simplesbml.SbmlModel method) getSpeciesInitialAmount() (simplesbml.SbmlModel method) getSpeciesInitialConcentration() (simplesbml.SbmlModel method)

I

isAmount() (simplesbml.SbmlModel method) isBoundarySpecies() (simplesbml.SbmlModel method) isConcentration() (simplesbml.SbmlModel method) isFloatingSpecies() (simplesbml.SbmlModel method)

isParameterValueSet() (simplesbml.SbmlModel method) isRuleType_Algebraic() (simplesbml.SbmlModel method) isRuleType_Assignment() (simplesbml.SbmlModel method) isRuleType_Rate() (simplesbml.SbmlModel method) isSpeciesValueSet() (simplesbml.SbmlModel method)

L

loadSBMLFile() (in module simplesbml)

loadSBMLStr() (in module simplesbml)

S

SbmlModel (class in simplesbml)

simplesbml (module), [1]

T

toSBML() (simplesbml.SbmlModel method)

W

writeCode() (in module simplesbml)

writeCodeFromFile() (in module simplesbml) writeCodeFromString() (in module simplesbml)